OrthoMCL-DB RELEASE 1.0

Due to the various gene naming scheme used in different genome centers, the gene 
accessions can be redundant. To facilitate OrthoMCL clustering and display in 
OrthoMCL-DB, a unified gene accession scheme (genome three-letter abbreviation 
followed by a number) was used. Please be aware that the same accession doesn't 
mean the same gene in different release of OrthoMCL-DB.

BAE_geneid_anno provides such a mapping between these two accessions.
BAE_all.fa stores the protein sequences for all genomes.
all_orthomcl.out is the final clustering result.
all_orthomcl.pat provides a file describing phyletic pattern (the number of 
genes in all genomes) for each group.
orthomcl.rbh stores the information for reciprocal better hit within species, 
and reciprocal best hit across species: the gene accessions and the two-way 
BLAST E-values. 
ODB_V1_MSA.tgz is a tgz package of all the Multiple Sequence Alignments shown
in OrthoMCL-DB V1.

Please note that in these files, there are 55 genomes plus one genome which was
not deposited into OrthoMCL-DB: Plasmodium vivax ("pvi",which was not publicly 
released yet when this clustering was done).